postprocessor.core.functions.tracks.clean_tracks

postprocessor.core.functions.tracks.clean_tracks(tracks, min_len: int = 15, min_gr: float = 1.0) → DataFrame

Clean small non-growing tracks and return the reduced dataframe

Parameters

• tracks – (m x n) dataframe where rows are cell tracks and columns are timepoints

• min_len – int number of timepoints cells must have not to be removed

• min_gr – float Minimum mean growth rate to assume an outline is growing