baby.tracker.core

TrackerCoordinator class to coordinate cell tracking and bud assignment.

Functions

get_nfeats_from_model(model)

switch_case_nfeats(nfeats)

Convenience TEMPORAL function to determine whether to use distance/location as a feature for tracking or not (nfeats=5 for no distance, 7 for distance) input number of feats

Classes

BudTracker([model, feats2use])

Attributes

CellTracker([feats2use, trapfeats, ...])

Class used to manage cell tracking.

FeatureCalculator(feats2use[, trapfeats, ...])

Base class for making use of regionprops-based features.

MasterTracker([ctrack_args, btrack_args, ...])

Coordinates the data transmission from CellTracker to BudTracker to reduce number of calls to regionprops function.