baby.segmentation.morph_thresh_seg

baby.segmentation.morph_thresh_seg(cnn_outputs, interior_threshold=0.9, overlap_threshold=0.9, bud_threshold=0.9, bud_dilate=False, bud_overlap=False, isbud_threshold=0.5)

Segment cell outlines from morphology output of CNN by thresholding

Specify overlap_threshold or bud_threshold as None to ignore.