baby.preprocessing.segoutline_flattening

baby.preprocessing.segoutline_flattening(fill_stack, info)

Returns a stack of images in order: edge: edges for all cells flattened into a single layer filled: filled area for all cells flattened into a single layer interiors: filled area excluding the edges overlap: regions occupied by more than one cell budring: edges located between mother and bud centres bud: buds that are are smaller than a fractional threshold of the mother