extraction.core.functions.custom.localisation.nuc_est_conv¶
- nuc_est_conv(cell_mask, trap_image, alpha=0.95, object_radius_estimation=0.085, gaussian_filter_shape=None, gaussian_sigma=None)[source]¶
- Parameters
cell_mask (
ndarray
) – the segmentation mask of the cell (filled)trap_image (
ndarray
) – the image for the trap in which the cell is (all
channels) :type alpha:
Optional
[float
] :param alpha: optional distribution alpha to get confidence intervals :type object_radius_estimation:Optional
[float
] :param object_radius_estimation: optional estimated object volume (in pixels), used to estimate the object radius. :type gaussian_filter_shape:Union
[int
,Tuple
[int
],None
] :param gaussian_filter_shape: optional tuple to pass to matlab_style_gauss2D, determines the kernel shape for convolutions. :type gaussian_sigma:Optional
[float
] :param gaussian_sigma: optional optional sigma to pass to matlab_style_gauss2D as sigma argument.