aliby.utils.argo.OmeroExplorer

class OmeroExplorer(host, user, password, min_date=(2020, 6, 1))

Bases: object

Attributes

acq

all_tags

cache

complete

desc

dsets

ids

log

n_dsets

positions

raw_acq

raw_log

raw_log_end

Methods

channels(setkey[, present])	setkey str indicating a set of channels
load([min_id, min_date])	min_id int
tags(tags[, present])	:setkey str tags to filter
timepoints(n[, op])	Filter experiments using the number of timepoints

backup
count_drift_alert
count_errors
count_in_log
dset
dset_count
find_duplicate_candidates
get_microscope
get_ph_params
get_timepoints
has_tags
image_ids
is_complete
is_interrupted
microscope
reset
reset_backup
return_completed
save
update_cache

__init__(host, user, password, min_date=(2020, 6, 1))

Methods

__init__(host, user, password[, min_date])
backup(name)
channels(setkey[, present])	setkey str indicating a set of channels
count_drift_alert(logfile)
count_errors(logfile)
count_in_log([kind, norm])
dset(n)
dset_count(dset[, kind, norm])
find_duplicate_candidates([days_tol])
get_microscope(parsed_log)
get_ph_params()
get_timepoints()
has_tags(d, tags)
image_ids()
is_complete(logfile)
is_interrupted(logfile)
load([min_id, min_date])	min_id int
microscope(microscope)
reset([backup_id])
reset_backup(name)
return_completed([kind])
save(fname)
tags(tags[, present])	:setkey str tags to filter
timepoints(n[, op])	Filter experiments using the number of timepoints
update_cache()

Attributes

acq
all_tags
cache
complete
desc
dsets
ids
log
n_dsets
positions
raw_acq
raw_log
raw_log_end

channels(setkey, present=True)

Setkey

str indicating a set of channels

Present

bool indicating whether the search should or shold not be in the dset

load(min_id=18000, min_date=None)

Min_id

int

Min_date

tuple

tags(tags, present=True)

:setkey str tags to filter

timepoints(n, op='greater')

Filter experiments using the number of timepoints