aliby.io.image.ImageDir¶
- class ImageDir(path, **kwargs)[source]¶
Bases:
BaseLocalImage
Image class for the case in which all images are split in one or multiple folders with time-points and channels as independent files. It inherits from BaseLocalImage so we only override methods that are critical.
Assumptions: - One folders per position. - Images are flat. - Channel, Time, z-stack and the others are determined by filenames. - Provides Dimorder as it is set in the filenames, or expects order during instatiation
- Attributes
- data
- dimorder
- metadata
- name
Methods
Return 5D dask array.
rechunk_data
Methods
__init__
(path, **kwargs)Return 5D dask array.
rechunk_data
(img)Attributes
data
dimorder
metadata
name