aliby.utils.argo.Argo¶
- class Argo(*args, **kwargs)[source]¶
Bases:
OmeroExplorer
- Attributes
- acq
- all_tags
- cache
- complete
- desc
- dsets
- ids
- log
- n_dsets
- positions
- raw_acq
- raw_log
- raw_log_end
Methods
channels
(setkey[, present])- setkey
str indicating a set of channels
load
([min_id, min_date])- min_id
int
tags
(tags[, present]):setkey str tags to filter
timepoints
(n[, op])Filter experiments using the number of timepoints
backup
count_drift_alert
count_errors
count_in_log
dset
dset_count
find_duplicate_candidates
get_microscope
get_ph_params
get_timepoints
has_tags
image_ids
is_complete
is_interrupted
microscope
reset
reset_backup
return_completed
save
update_cache
Methods
__init__
(*args, **kwargs)backup
(name)channels
(setkey[, present])- setkey
str indicating a set of channels
count_drift_alert
(logfile)count_errors
(logfile)count_in_log
([kind, norm])dset
(n)dset_count
(dset[, kind, norm])find_duplicate_candidates
([days_tol])get_microscope
(parsed_log)get_ph_params
()get_timepoints
()has_tags
(d, tags)image_ids
()is_complete
(logfile)is_interrupted
(logfile)load
([min_id, min_date])- min_id
int
microscope
(microscope)reset
([backup_id])reset_backup
(name)return_completed
([kind])save
(fname)tags
(tags[, present]):setkey str tags to filter
timepoints
(n[, op])Filter experiments using the number of timepoints
update_cache
()Attributes
acq
all_tags
cache
complete
desc
dsets
ids
log
n_dsets
positions
raw_acq
raw_log
raw_log_end
- channels(setkey, present=True)¶
- Setkey
str indicating a set of channels
- Present
bool indicating whether the search should or shold not be in the dset
- load(min_id=18000, min_date=None)¶
- Min_id
int
- Min_date
tuple
- tags(tags, present=True)¶
:setkey str tags to filter
- timepoints(n, op='greater')¶
Filter experiments using the number of timepoints