aliby.tile.tiler.Trap

class Trap(centre, parent, size, max_size)

Bases: object

Stores a trap’s location and size. Allows checks to see if the trap should be padded. Can export the trap either in OMERO or numpy formats.

Methods

as_range(tp)	Return trap in a range format: two slice objects that can be used in arrays
as_tile(tp)	Return trap in the OMERO tile format of x, y, w, h where x, y are at the bottom left corner of the tile and w and h are the tile width and height.
at_time(tp)	Return trap centre at time tp by applying drifts

__init__(centre, parent, size, max_size)

Methods

__init__(centre, parent, size, max_size)
as_range(tp)	Return trap in a range format: two slice objects that can be used in arrays
as_tile(tp)	Return trap in the OMERO tile format of x, y, w, h where x, y are at the bottom left corner of the tile and w and h are the tile width and height.
at_time(tp)	Return trap centre at time tp by applying drifts

as_range(tp)

Return trap in a range format: two slice objects that can be used in arrays

Parameters

tp: integer

Index for a time point

Returns

A slice of x coordinates from left to right

A slice of y coordinates from top to bottom

as_tile(tp)

Return trap in the OMERO tile format of x, y, w, h where x, y are at the bottom left corner of the tile and w and h are the tile width and height.

Parameters

tp: integer

Index for a time point

Returns

x: int

x-coordinate of bottom left corner of tile

y: int

y-coordinate of bottom left corner of tile

w: int

Width of tile

h: int

Height of tile

at_time(tp)

Return trap centre at time tp by applying drifts

Parameters

tp: integer

Index for a time point

Returns

trap_centre:

rtype

List[int] ..