aliby.io.dataset

Dataset is a group of classes to manage multiple types of experiments:

  • Remote experiments on an OMERO server (located in src/aliby/io/omero.py)

  • Local experiments in a multidimensional OME-TIFF image containing the metadata

  • Local experiments in a directory containing multiple positions in independent images with or without metadata

Functions

dispatch_dataset(expt_id, **kwargs)

Choose a subtype of dataset based on the identifier.

Classes

DatasetLocalABC(dpath, *args, **kwargs)

Abstract Base class to fetch local files, either OME-XML or raw images.

DatasetLocalDir(dpath, *args, **kwargs)

Organise an entire dataset, composed of multiple images, as a directory containing directories with individual files.

DatasetLocalOME(dpath, *args, **kwargs)

Load a dataset from a folder